PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026722m
Common NameCARUB_v10026722mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 344aa    MW: 39556.9 Da    PI: 5.3553
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026722mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.81.7e-33141052102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+ye+++d++ ++++sws+n++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF ++ F +g+  l++
  Carubv10026722m  14 FLTKTYEMVDDSSSDSVVSWSDNNKSFIVKNPAEFSRDLLPRFFKHKNFSSFIRQLNTYGFRKVDPEK---------WEFLNEDFVRGRPYLMK 98 
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  Carubv10026722m  99 NIHRRKP 105
                      ****985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.8E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.9E-5810103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.8E-3611103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.8E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDENNGGSSS LPPFLTKTYE MVDDSSSDSV VSWSDNNKSF IVKNPAEFSR DLLPRFFKHK  60
NFSSFIRQLN TYGFRKVDPE KWEFLNEDFV RGRPYLMKNI HRRKPVHSHS LSNIQAQNPL  120
TESERRSMED QIERLKKEKE GLLVELQSQE QERKDFEMQV TTLKDRLQHM EQHQKSIVAY  180
VSQVLEKPGL SLNLENHERR KRRLPETPLP ASRSHVEQVE NLESSLTFWE NLVSESYEKS  240
GVQSSSMDLD AAESSLSMGD TRPKSSKIDM NLEPPVTITA AAPKTGVNDD FWEQCLTENP  300
GSTEQQEVQS ERKDVDNDNG NKIGNQRTFW WNSGNVNNIT EKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D2e-22710322129Heat shock factor protein 1
5d5v_B2e-22710322129Heat shock factor protein 1
5d5u_B2e-22710322129Heat shock factor protein 1
2ldu_A2e-22610312120Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2290580.0AK229058.1 Arabidopsis thaliana mRNA for heat shock transcription factor, complete cds, clone: RAFL16-34-M14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280755.10.0hypothetical protein CARUB_v10026722mg
SwissprotQ9FK720.0HFA4C_ARATH; Heat stress transcription factor A-4c
TrEMBLR0GR490.0R0GR49_9BRAS; Uncharacterized protein
STRINGAT5G45710.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.10.0HSF family protein